Danaher Marker

Quality of Danahe Marker inconsistent variablity among genes in each signature

## $B_cells
##       BLK CD19 MS4A1 TNFRSF17 FCRL2 KIAA0125 PNOC SPIB TCL1A
## [1,] 1255 2645   119      563  4289      388 1061  269    38
## 
## $CD45
##      PTPRC
## [1,] 11371
## 
## $CD8_T_cells
##      CD8A CD8B
## [1,]  583  301
## 
## $Cytotoxic_cells
##      CTSW GNLY GZMA GZMB GZMH KLRB1 KLRD1 KLRK1 PRF1 NKG7
## [1,]  152    9  105   45   67   325   390  5970  123   22
## 
## $DC
##      CCL13 CD209 HSD11B1
## [1,]    NA   652    2820
## 
## $Exhausted_CD8
##      CD244 EOMES LAG3 PTGER4
## [1,]  2743  5345 1385  12979
## 
## $Macrophages
##      CD163 CD68 CD84 MS4A4A
## [1,]   324  160 2727   2433
## 
## $Mast_cells
##      MS4A2 TPSAB1  CPA3  HDC TPSB2
## [1,] 16646     24 16825 3098    NA
## 
## $Neutrophils
##      CSF3R S100A12 CEACAM3 FCAR FCGR3B FPR1 SIGLEC5
## [1,]   171      81     190  872   8458  187    6814
## 
## $NK_CD56dim_cells
##      IL21R KIR2DL3 KIR3DL1 KIR3DL2
## [1,]  3724    2784    4834     623
## 
## $NK_cells
##      NCR1 XCL2 XCL1
## [1,] 9682  389  272
## 
## $T_cells
##      CD3D  CD3E CD3G   CD6 SH2D1A TRAT1
## [1,] 1185 13126 5427 15536  10218 12141
## 
## $Th1_cells
##      TBX21
## [1,]   917
## 
## $Treg
##      FOXP3
## [1,] 16273

10X correlation vs Danahe’s Signature

## Gene Signature for FACS